bam2html package

Subpackages

• bam2html.bin package
  • Submodules
  • bam2html.bin.main module
  • Module contents
• bam2html.util package
  • Submodules
  • bam2html.util.logger module
  • Module contents

Module contents

class bam2html.Bam2HTML(positions, bam=None, bam_list=None, reference=None, column=80, color='red', background='yellow', samtools='samtools', outdir='.', prefix=None, **kwargs)

Bases: object

highlight(summary=False, compress=None)